Looking for a wholesome treat that satisfies your sweet tooth without the guilt? These homemade Healthy Twix Peanut Butter Cookie Cups are an absolute dream come true. Imagine the classic combination of rich chocolate, creamy peanut butter, and a delightful cookie crunch, all crafted into a bite-sized indulgence. Lightly sweetened and packed with a thoughtful amount of protein, these cookie cups are designed to keep you feeling satisfied, making them the perfect feel-good treat for any time of day.
If you’re on the hunt for more smart and delicious snack ideas, you’ve come to the right place. Be sure to explore our other fan-favorite recipes, like the Super Healthy Raspberry Oatmeal Bars, the delightful Healthy Chunky Monkey Oatmeal Bars, and these incredible Healthy Flourless Monster Cookies. Each recipe is simple to make, incredibly delicious, and guaranteed to hit the spot while keeping your health goals in mind.

Why You’ll Absolutely Love These Healthy Twix Peanut Butter Cookie Cups
Prepare to fall in love with these mini marvels! If the irresistible duo of chocolate and peanut butter holds a special place in your heart, these healthy Twix cookie cups are destined to become your new go-to indulgence. They skillfully recreate that cherished layered treat experience, featuring a perfectly soft, tender cookie base, a lusciously creamy peanut butter center, and a smooth, rich chocolate topping that brings it all together in harmonious bliss.
Here’s a deeper dive into what makes this healthy Twix recipe truly exceptional and a must-try for everyone:
- **A Healthier Take on a Classic:** We’ve reimagined the beloved Twix bar, infusing it with wholesome ingredients to create a treat that’s genuinely good for you. You get all the nostalgic flavors of chocolate and peanut butter atop a delightful cookie base, but with a nutritious twist.
- **Dietary Friendly Options:** This recipe is naturally gluten-free, thanks to the use of almond flour, and can easily be made dairy-free by opting for dairy-free chocolate chips. It’s perfect for those with specific dietary needs or anyone looking for lighter alternatives.
- **Naturally Sweetened:** Say goodbye to excessive refined sugars! Our cookie cups are delicately sweetened with natural options like agave nectar or maple syrup, offering just the right amount of sweetness without being overpowering.
- **Protein-Packed Satisfaction:** Each delicious cup delivers around 3-4 grams of protein, making it more than just a dessert. This protein boost helps to keep you feeling fuller and more satisfied, curbing those unhealthy cravings effectively.
- **Simple & Wholesome Ingredients:** Forget complicated recipes and obscure ingredients. This homemade version uses readily available, wholesome components and straightforward steps, ensuring anyone can whip up a batch with ease.
- **Freezer-Friendly Convenience:** These cookie cups are incredibly practical for meal prep. Make a larger batch and store them in the freezer for whenever a craving strikes, ensuring you always have a healthy, delightful snack or dessert on hand. They thaw beautifully and taste just as fresh.
If you’ve ever dreamt of combining the pure joy of a classic Twix bar with the comforting, nutty richness of a peanut butter cookie, then this unique recipe is practically calling your name. Once you experience these healthy Twix bites, you’ll find yourself reaching for them again and again, guilt-free and utterly delighted.

Essential Ingredients You Need for These Delightful Treats
Crafting these homemade Twix peanut butter treats is surprisingly simple, built upon three distinct yet harmonious layers. Each ingredient plays a crucial role in creating the perfect balance of texture and flavor.
Cookie Base
- 1 cup almond flour (Provides a fantastic gluten-free texture and a subtle nutty flavor.)
- 1 tablespoon protein powder (Vanilla flavor recommended, but unflavored works too. This adds a protein boost. Alternatively, coconut flour or oat flour can be used for similar texture without the added protein.)
- 3 tablespoons agave nectar or maple syrup (Your choice for natural, gentle sweetness.)
- 2 tablespoons coconut oil, melted (Helps bind the cookie base and adds a rich, subtle coconut note.)
- 1 teaspoon vanilla extract (Enhances all the sweet flavors.)
- Pinch of salt (A tiny bit of salt perfectly balances the sweetness.)
Peanut Butter Layer
- ½ cup creamy peanut butter (Natural, unsweetened peanut butter is ideal. Feel free to use almond butter or any other nut butter for variation.)
- 3 tablespoons agave nectar or maple syrup (To sweeten the creamy peanut butter layer.)
- 1 tablespoon coconut oil, melted (Ensures a smooth, firm, and easily spreadable peanut butter layer once chilled.)
- 1 teaspoon vanilla extract (Complements the nut butter beautifully.)
- Pinch of salt (Essential for enhancing the peanut butter flavor.)
Chocolate Layer
- 1 cup dark chocolate chips or semi-sweet chocolate chips (For a truly healthy option, look for brands with lower sugar content. Use dairy-free chocolate chips for a vegan version.)
- 1 teaspoon coconut oil (Helps create a smooth, glossy, and perfectly pourable chocolate topping that sets well.)
Step-by-Step Instructions: How to Make Healthy Twix Peanut Butter Cookie Cups
Follow these easy steps to create your own batch of delicious and healthy Twix cookie cups:
Cookie Base Preparation
- Begin by preheating your oven to 350 degrees Fahrenheit (175°C). Prepare your mini muffin pan; a silicone mini muffin mold is highly recommended for easy removal. If using a standard mini muffin pan, lightly spray it with non-stick cooking spray to prevent sticking.
- In a small mixing bowl, combine all the cookie base ingredients: almond flour, protein powder (or your chosen alternative), agave nectar or maple syrup, melted coconut oil, vanilla extract, and a pinch of salt. Mix thoroughly with a fork or spoon until a cohesive dough forms.
- Divide the cookie mixture evenly among 18 mini muffin tins, filling each about one-third full. Gently press the mixture down with your fingertips or the back of a spoon to create a flat, even base.
- Bake for 10-12 minutes, or until the edges are lightly golden brown. The center should still be soft. Remove from the oven and let the cookie bases cool completely in the pan before proceeding. This is crucial for them to firm up.
Peanut Butter Layer Application
- While your cookie bases are cooling, prepare the peanut butter layer. In a separate small bowl, whisk together the peanut butter, agave nectar or maple syrup, melted coconut oil, vanilla extract, and a pinch of salt until the mixture is smooth and well combined.
- Once the cookie bases are completely cooled, take about one teaspoon of the peanut butter mixture and gently spread it over each cookie cup. For a neater finish, you can transfer the peanut butter filling into a pastry bag and pipe it into each muffin tin.
- Place the muffin tray in the refrigerator for about 5 minutes to allow the peanut butter layer to firm up slightly. Once firm, you can use a spoon to smooth out the tops evenly if desired.
Chocolate Layer Topping
- In a microwave-safe bowl, combine the chocolate chips and coconut oil. Microwave in 30-second intervals, stirring after each, until the chocolate is fully melted and smooth. This usually takes about 1 to 1.5 minutes in total.
- Carefully pour the melted chocolate over the set peanut butter layer in each cookie cup, ensuring the tops are fully covered. For a decorative touch, you can also use a pastry bag to drizzle the melted chocolate.
- Transfer the entire muffin pan back into your refrigerator or freezer. Allow the cups to chill and set for at least 2 hours, or until the chocolate topping is completely firm. For an extra touch of gourmet flavor, sprinkle a tiny bit of sea salt on top of the chocolate before it sets!

Pro Tips for Perfect Healthy Twix Peanut Butter Cookie Cups Every Time
To ensure your Healthy Twix Peanut Butter Cookie Cups turn out absolutely perfect, with that ideal balance of texture and flavor, keep these expert tips in mind. They’ll help you achieve bakery-quality results in your home kitchen:
- **Invest in a Silicone Muffin Pan:** While a regular muffin pan works, a silicone mini muffin pan is a game-changer. It makes removing the delicate cookie cups incredibly easy, preventing sticking and ensuring each cup maintains its perfect shape. If you don’t have one, make sure to grease your metal pan very well.
- **Do Not Over-Bake the Cookie Base:** The cookie base should be lightly golden around the edges and still slightly soft in the center when you remove it from the oven. Over-baking can lead to a dry, crumbly base instead of the tender, chewy texture you want. It will continue to firm up as it cools.
- **Cool Each Layer Thoroughly:** Patience is key for beautifully layered treats. Allow each layer—the cookie base, then the peanut butter—to cool and set completely before adding the next. This critical step prevents the chocolate from bleeding into the peanut butter and ensures clean, defined layers that look as good as they taste.
- **Chill the Peanut Butter Layer Adequately:** If your peanut butter mixture feels too soft or runny after preparing, give it a few extra minutes in the fridge before spreading it. A slightly firmer peanut butter layer is much easier to work with and will hold its shape better under the warm chocolate.
- **Use Quality Ingredients:** The healthier nature of these treats shines brightest when you use high-quality ingredients. Opt for natural peanut butter with no added sugar, good quality chocolate, and pure vanilla extract for the best flavor profile.
- **Customize Your Topping:** Don’t hesitate to get creative with your chocolate topping. A sprinkle of flaky sea salt elevates the flavor profile, or consider a drizzle of white chocolate, chopped nuts, or even a tiny dust of cocoa powder for an extra touch.
Delicious Peanut Butter Swaps and Variations
Looking to switch things up in your Healthy Twix Peanut Butter Cookie Cups or cater to specific dietary needs? The beauty of this recipe lies in its versatility! These simple swaps will still deliver that same creamy, dreamy center you love, with a slightly different twist:
- **Almond Butter:** A classic alternative that offers a slightly milder flavor and equally creamy texture.
- **Cashew Butter:** For a richer, subtly sweet, and incredibly smooth filling, cashew butter is an excellent choice.
- **Sunflower Seed Butter (SunButter):** This is your ideal choice for a completely nut-free option, perfect for those with allergies. It has a distinct, satisfying flavor.
- **Tahini:** If you’re adventurous and enjoy a slightly earthier, more sophisticated flavor profile, tahini can create a unique and delicious layer.
No matter which nut or seed butter you choose, the most important thing is to ensure it’s a smooth variety and not too runny. A thicker consistency will help the layers hold together beautifully in this healthy Twix recipe, creating a perfect bite every time.

How to Store Your Healthy Peanut Butter Twix Cups for Optimal Freshness
One of the many perks of these Healthy Twix Peanut Butter Cookie Cups is how wonderfully they store, making them ideal for meal prep and having a wholesome treat readily available. Here’s how to keep them fresh and delicious, ensuring you can enjoy them throughout the week and beyond:
- **Refrigerator Storage:** For immediate enjoyment, store your finished cookie cups in an airtight container in the refrigerator. They will remain fresh and delicious for up to one week. The chilled layers offer a delightful, firm texture.
- **Freezer Storage for Long-Term:** If you want to extend their shelf life, these cookie cups are incredibly freezer-friendly. Place them in a single layer on a baking sheet to freeze solid (this prevents them from sticking together), then transfer them to an airtight freezer-safe container or bag. They can be frozen for up to three months.
- **Thawing and Enjoying:** When you’re ready to enjoy a frozen cookie cup, simply remove it from the freezer and let it sit at room temperature for about 5-10 minutes. You’ll find they taste absolutely amazing whether straight from the fridge with a firm bite, or slightly softened, allowing the layers to become more yielding. Either way, they’re a winner!
Frequently Asked Questions (FAQs) for Healthy Peanut Butter Chocolate Cups
Got questions about making these irresistible healthy treats? We’ve got answers to some common queries to help you perfect your batch of Healthy Twix Peanut Butter Cookie Cups.
Can I make these homemade Twix treats without protein powder?
- Absolutely, yes! The protein powder in the cookie base primarily adds a boost of protein, but it’s not essential for the structure. You can easily swap it out for an equal amount of coconut flour or oat flour. Both alternatives will provide a similar texture to your Healthy Twix Peanut Butter Cookie Cups without significantly altering the taste.
Do I have to use a mini muffin pan?
- A mini muffin pan is highly recommended because it gives these treats their classic, bite-sized cup shape and ensures even baking. However, if you only have a regular-sized muffin pan, you can certainly use it. Just be aware that you’ll get fewer, larger cookie cups, and you may need to adjust the baking time for the cookie base by adding a few extra minutes until golden.
Can I make these homemade Twix treats vegan?
- Yes, making these treats vegan is incredibly simple! The recipe is already mostly plant-based. To ensure they are fully vegan, just use dairy-free chocolate chips for the chocolate layer. The agave nectar or maple syrup is already a vegan sweetener, and all other ingredients are typically plant-based.
How can I reduce the sugar content further?
- To further reduce the sugar, you can try using sugar-free maple syrup or agave nectar. Additionally, opt for dark chocolate chips with a very high cocoa percentage (70% or higher), as these naturally contain less sugar. You could also slightly reduce the amount of sweetener in both the cookie and peanut butter layers if you prefer a less sweet treat.
Can I use a different type of flour for the cookie base?
- Almond flour provides the best texture for this gluten-free recipe. While you could experiment with other gluten-free flours like oat flour (ensure it’s certified gluten-free if needed), the liquid ratios might need slight adjustments as different flours absorb moisture differently. We recommend sticking with almond flour for consistent results.

Healthy Twix Peanut Butter Cookie Cups: Your Ultimate Guilt-Free Treat!
These delightful little cups of joy are more than just a dessert; they’re a versatile addition to your healthy lifestyle. Perfect for efficient meal prep, a satisfying after-school snack for the kids, or even as a secret midnight indulgence straight from the freezer (no judgment here!). They stand out for being remarkably easy to make, wonderfully satisfyingly sweet, and an ingenious way to savor that timeless chocolate and peanut butter combination in a much healthier form.
If you’re a true enthusiast of healthy peanut butter chocolate cups, or if you simply adore a creative, better-for-you candy bar remix, then this recipe is an absolute must-try. You’ll be amazed at how such a simple treat can deliver so much flavor and satisfaction. Don’t forget to share your homemade Twix creations on Pinterest, Instagram, and Facebook, and be sure to tag us! We love seeing your healthy chocolatey masterpieces and sharing in your baking success!
More Peanut Butter Delights You’ll Adore
Can’t get enough of peanut butter? Neither can we! Here are more delicious, healthy recipes featuring that creamy, nutty goodness:
- Healthy Banana Peanut Butter Brownies
- Healthy Peanut Butter Crunch Bars
- Chocolate Peanut Butter Protein Bars – No Bake
- Chex Chocolate Peanut Butter Bars
- Healthy Peanut Butter Banana Bars
Healthy Twix Peanut Butter Cookie Cups
Author: Kim Lange
Looking for something sweet, chocolatey, and peanut buttery without going overboard? These homemade Healthy Twix Peanut Butter Cookie Cups are the perfect feel-good treat, lightly sweetened and packed with just enough protein to keep you satisfied.
Yields: 18 Servings
Prep Time: 20 mins
Cook Time: 10 mins
Ingredients
COOKIE BASE
- 1 cup almond flour
- 1 tablespoon vanilla protein powder (can also use coconut flour or oat flour)
- 3 tablespoons agave nectar or maple syrup
- 2 tablespoons coconut oil, melted
- 1 teaspoon vanilla extract
- Pinch of salt
PEANUT BUTTER LAYER
- ½ cup peanut butter (or almond butter or any nut butter)
- 3 tablespoons agave nectar or maple syrup
- 1 tablespoon coconut oil, melted
- 1 teaspoon vanilla extract
- Pinch of salt
CHOCOLATE LAYER
- 1 cup chocolate chips (use dairy-free for vegan version)
- 1 teaspoon coconut oil
Instructions
HEALTHY TWIX PEANUT BUTTER COOKIE CUPS RECIPE
COOKIE BASE
- Preheat your oven to 350 degrees F (175°C). Use a mini muffin silicone mold or a mini muffin pan sprayed with non-stick cooking spray.
- In a small bowl, mix all of the cookie base ingredients (almond flour, protein powder, agave/maple syrup, melted coconut oil, vanilla, and salt) together using a fork or spoon to combine.
- Divide the cookie mixture evenly among the 18 muffin tins, filling about 1/3 full. Press down gently so the tops are flat. Bake for 10-12 minutes or until golden brown. Let cool completely.
PEANUT BUTTER LAYER
- In a small bowl, whisk together all of the peanut butter layer ingredients (peanut butter, agave/maple syrup, melted coconut oil, vanilla, and salt) until combined and smooth.
- Once the cookie base layer has completely cooled, add one teaspoon of the peanut butter mixture onto each cookie cup. You can use a pastry bag for a neater application.
- Place the muffin tray in the fridge to let the peanut butter mixture firm up for about 5 minutes, then smooth the tops out evenly with a spoon.
CHOCOLATE LAYER
- Melt the chocolate chips with the coconut oil in the microwave for 1 1/2 minutes or until melted and smooth, stirring every 30 seconds.
- Pour the melted chocolate to fill the tops of each cup. You can also use a pastry bag to drizzle the melted chocolate on top.
- Transfer the muffin pan to your refrigerator or freezer and allow to set for 2 hours, or until completely firm. Feel free to top with some sea salt!
Nutrition Information (per serving)
Calories: 172kcal | Carbohydrates: 15g | Protein: 3g | Fat: 12g | Saturated Fat: 5g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 2g | Cholesterol: 2mg | Sodium: 33mg | Potassium: 45mg | Fiber: 2g | Sugar: 6g | Vitamin C: 1mg | Calcium: 21mg | Iron: 1mg
Keyword: candy bars, chocolate, cookie cups, cookies, healthy, peanut butter, twix
Recipe slightly modified from Hungry Happens



